X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fgo%2FPfamToGoParser.java;h=ca55c1277b96030b40c62027f65a72d26ec186fa;hb=e22f363c7273fc888ef911ad1f20d520a6bf030e;hp=8840b96c0e6e472e15619bb3cc70bdb0e7f5f641;hpb=73c5b11c1a00e539afb246e345ebf3f042dded78;p=jalview.git

diff --git a/forester/java/src/org/forester/go/PfamToGoParser.java b/forester/java/src/org/forester/go/PfamToGoParser.java
index 8840b96..ca55c12 100644
--- a/forester/java/src/org/forester/go/PfamToGoParser.java
+++ b/forester/java/src/org/forester/go/PfamToGoParser.java
@@ -10,7 +10,6 @@ import java.util.List;
 import java.util.regex.Matcher;
 import java.util.regex.Pattern;
 
-import org.forester.protein.DomainId;
 import org.forester.util.ForesterUtil;
 
 public class PfamToGoParser {
@@ -78,7 +77,7 @@ public class PfamToGoParser {
                     if ( ForesterUtil.isEmpty( pfam ) || ForesterUtil.isEmpty( go ) ) {
                         throw new IOException( "unexpected format [\"" + line + "\"]" );
                     }
-                    final PfamToGoMapping map = new PfamToGoMapping( new DomainId( pfam ), new GoId( go ) );
+                    final PfamToGoMapping map = new PfamToGoMapping( pfam, new GoId( go ) );
                     ++_mapping_count;
                     mappings.add( map );
                 }