X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fio%2Fparsers%2FGeneralMsaParser.java;h=507ae1f670c29ec12aade42448cc495726a66077;hb=299c529fea070487998aee60ed7810af57f3a071;hp=6e794775ac1fdfe4a90997b87ab0e60e52993d86;hpb=eee996a6476a1e3d84c07f8f690dcde3ff4b2ef5;p=jalview.git

diff --git a/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java b/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java
index 6e79477..507ae1f 100644
--- a/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java
+++ b/forester/java/src/org/forester/io/parsers/GeneralMsaParser.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers;
 
@@ -48,7 +48,7 @@ public final class GeneralMsaParser {
     private static final Pattern NAME_SEQ_PATTERN          = Pattern.compile( "(\\S+)\\s+(\\S+)\\s*" );
     private static final Pattern INDENTED_SEQ_PATTERN      = Pattern.compile( "\\s+(\\S+)\\s*" );
     private static final Pattern NON_INDENTED_SEQ_PATTERN  = Pattern.compile( "(\\S+).*" );
-    private static final Pattern PROBCONS_REGEX            = Pattern.compile( "^CLUSTAL\\s" );
+    private static final Pattern PROBCONS_REGEX            = Pattern.compile( "^CLUSTAL" );
     private static final Pattern MUSCLE_REGEX              = Pattern.compile( "^MUSCLE\\s\\(" );
     private static final Pattern CLUSTAL_REGEX             = Pattern.compile( "^PROBCONS\\s" );
     private static final Pattern ANYTHING_REGEX            = Pattern.compile( "[\\d\\s]+" );