X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fio%2Fparsers%2Fnhx%2FNHXtags.java;h=7cf98e666c46e9cadd132e8f0d7e000409e41d54;hb=6062dfb954cafb6af22e01af89222888d9d5ba66;hp=c6a16f93c7280ade96cb0897febb3646aba507db;hpb=eee996a6476a1e3d84c07f8f690dcde3ff4b2ef5;p=jalview.git

diff --git a/forester/java/src/org/forester/io/parsers/nhx/NHXtags.java b/forester/java/src/org/forester/io/parsers/nhx/NHXtags.java
index c6a16f9..7cf98e6 100644
--- a/forester/java/src/org/forester/io/parsers/nhx/NHXtags.java
+++ b/forester/java/src/org/forester/io/parsers/nhx/NHXtags.java
@@ -21,35 +21,17 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.nhx;
 
 public final class NHXtags {
 
-    public static final String CUSTOM_DATA_ON_NODE        = "XN=";
-    public static final String COLOR                      = "C=";
-    public static final String PARENT_BRANCH_WIDTH        = "W=";
-    public static final String SUBTREE_NEIGHBORS          = "SNn=";
-    public static final String SUPER_ORTHOLOGOUS          = "SOn=";
-    public static final String ORTHOLOGOUS                = "On=";
-    public static final String TAXONOMY_ID                = "T=";
-    public static final String SUPPORT                    = "B=";
-    public static final String IS_DUPLICATION             = "D=";
-    public static final String ANNOTATION                 = "AN="; //TODO fix on website NHXv2
-    public static final String SPECIES_NAME               = "S=";
-    public static final String DOMAIN_STRUCTURE           = "DS=";
-    public static final String GENE_NAME                  = "GN=";
-    public static final String GENE_NAME_SYNONYM          = "G=";
-    public static final String SEQUENCE_ACCESSION         = "AC=";
-    public static final String NODE_IDENTIFIER            = "ID="; //TODO fix on website NHXv2
-    public static final Object BRANCH_WIDTH               = "W=";
-    @Deprecated
-    public static final String BINARY_DOMAIN_COMBINATIONS = "GDC=";
-    @Deprecated
-    public static final String DOMAINS_SEPARATOR          = "\\|";
-    @Deprecated
-    public static final String DOMAINS                    = "GD=";
-    @Deprecated
-    public static final String EC_NUMBER                  = "E=";
+    public static final String TAXONOMY_ID        = "T=";
+    public static final String SUPPORT            = "B=";
+    public static final String IS_DUPLICATION     = "D=";
+    public static final String SPECIES_NAME       = "S=";
+    public static final String DOMAIN_STRUCTURE   = "DS=";
+    public static final String GENE_NAME          = "GN=";
+    public static final String SEQUENCE_ACCESSION = "AC=";
 }