X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fio%2Fparsers%2Fphyloxml%2FPhyloXmlHandler.java;h=3e2f6a72932ae33fabddb74592efb805efc5daca;hb=10297bd8b8a4b4ab198a17a42fc6ff24ae2ed49b;hp=2c347a19c45630ede80f6077baef075714b7aad1;hpb=e6176aa35853eeaa7ab3a4f2d8a1431d9c76a290;p=jalview.git

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlHandler.java b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlHandler.java
index 2c347a1..3e2f6a7 100644
--- a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlHandler.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlHandler.java
@@ -309,7 +309,7 @@ public final class PhyloXmlHandler extends DefaultHandler {
             }
             else if ( qualified_name.equals( PhyloXmlMapping.BINARY_CHARACTERS ) ) {
                 node.getNodeData().setBinaryCharacters( ( BinaryCharacters ) BinaryCharactersParser.getInstance()
-                        .parse( element ) );
+                                                        .parse( element ) );
             }
             else if ( qualified_name.equals( PhyloXmlMapping.COLOR ) ) {
                 node.getBranchData().setBranchColor( ( BranchColor ) ColorParser.getInstance().parse( element ) );
@@ -406,15 +406,15 @@ public final class PhyloXmlHandler extends DefaultHandler {
                 final XmlElement element = new XmlElement( namespace_uri, local_name, local_name, attributes );
                 if ( element.isHasAttribute( PhyloXmlMapping.PHYLOGENY_IS_REROOTABLE_ATTR ) ) {
                     getCurrentPhylogeny().setRerootable( Boolean.parseBoolean( element
-                            .getAttribute( PhyloXmlMapping.PHYLOGENY_IS_REROOTABLE_ATTR ) ) );
+                                                                               .getAttribute( PhyloXmlMapping.PHYLOGENY_IS_REROOTABLE_ATTR ) ) );
                 }
                 if ( element.isHasAttribute( PhyloXmlMapping.PHYLOGENY_BRANCHLENGTH_UNIT_ATTR ) ) {
                     getCurrentPhylogeny()
-                            .setDistanceUnit( element.getAttribute( PhyloXmlMapping.PHYLOGENY_BRANCHLENGTH_UNIT_ATTR ) );
+                    .setDistanceUnit( element.getAttribute( PhyloXmlMapping.PHYLOGENY_BRANCHLENGTH_UNIT_ATTR ) );
                 }
                 if ( element.isHasAttribute( PhyloXmlMapping.PHYLOGENY_IS_ROOTED_ATTR ) ) {
                     getCurrentPhylogeny().setRooted( Boolean.parseBoolean( element
-                            .getAttribute( PhyloXmlMapping.PHYLOGENY_IS_ROOTED_ATTR ) ) );
+                                                                           .getAttribute( PhyloXmlMapping.PHYLOGENY_IS_ROOTED_ATTR ) ) );
                 }
                 if ( element.isHasAttribute( PhyloXmlMapping.PHYLOGENY_TYPE_ATTR ) ) {
                     getCurrentPhylogeny().setType( ( element.getAttribute( PhyloXmlMapping.PHYLOGENY_TYPE_ATTR ) ) );