X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fio%2Fparsers%2Fphyloxml%2FPhyloXmlMapping.java;h=9e72a30076df3cf1e4516d923f02221398e71420;hb=6062dfb954cafb6af22e01af89222888d9d5ba66;hp=7e2747d02b05830ae0da64264601dd6fe3a97695;hpb=eee996a6476a1e3d84c07f8f690dcde3ff4b2ef5;p=jalview.git

diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlMapping.java b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlMapping.java
index 7e2747d..9e72a30 100644
--- a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlMapping.java
+++ b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlMapping.java
@@ -23,7 +23,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.io.parsers.phyloxml;
 
@@ -42,6 +42,7 @@ public final class PhyloXmlMapping {
     public static final String PHYLOGENY_TYPE_ATTR                                 = "type";
     public static final String CLADE                                               = "clade";
     public static final String NODE_NAME                                           = "name";
+    public static final String NODE_COLLAPSE                                       = "collapse";
     public static final String SEQUENCE                                            = "sequence";
     public static final String SEQUENCE_NAME                                       = "name";
     public static final String SEQUENCE_SYMBOL                                     = "symbol";
@@ -73,6 +74,7 @@ public final class PhyloXmlMapping {
     public static final String BINARY_CHARACTERS_LOST_COUNT_ATTR                   = "lost_count";
     public static final String BRANCH_LENGTH                                       = "branch_length";
     public static final String CONFIDENCE                                          = "confidence";
+    public static final String CONFIDENCE_SD_ATTR                                  = "stddev";
     public static final String CONFIDENCE_TYPE_ATTR                                = "type";
     public static final String COLOR                                               = "color";
     public static final String COLOR_RED                                           = "red";