X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fio%2Fparsers%2Fphyloxml%2FPhyloXmlUtil.java;h=f7aa9626e040bf53a1c1bb42e7550e0f08557544;hb=656be28debec520e0e35a8b311114398a40ea366;hp=9ccfdf90d211c53444bcc83eddd89f7829941235;hpb=3be5f9e46469980f068a9f8170e1d20849b5eaf8;p=jalview.git diff --git a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlUtil.java b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlUtil.java index 9ccfdf9..f7aa962 100644 --- a/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlUtil.java +++ b/forester/java/src/org/forester/io/parsers/phyloxml/PhyloXmlUtil.java @@ -21,7 +21,7 @@ // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com -// WWW: www.phylosoft.org/forester +// WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.io.parsers.phyloxml; @@ -31,13 +31,14 @@ import java.util.List; import java.util.Set; import java.util.regex.Pattern; +import org.forester.io.parsers.util.ParserUtils; + public final class PhyloXmlUtil { public static final String OTHER = "other"; public static final String UNKNOWN = "unknown"; public final static Pattern SEQUENCE_SYMBOL_PATTERN = Pattern.compile( "\\S{1,20}" ); - public final static Pattern TAXOMONY_CODE_PATTERN = Pattern - .compile( "[a-zA-Z0-9_]{1,10}" ); + public final static Pattern TAXOMONY_CODE_PATTERN = ParserUtils.TAXOMONY_CODE_PATTERN_1; public final static Pattern LIT_REF_DOI_PATTERN = Pattern .compile( "[a-zA-Z0-9_\\.]+\\S+" ); public final static Set SEQUENCE_TYPES = new HashSet();