X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fio%2Fparsers%2Futil%2FParserUtils.java;h=a1f842ee0df8353be6a37a3606bda2296cfd42d9;hb=44fddb76faa8975295b8b0ad38609256b5011ced;hp=8d65e2434e58d438f2545b557d5e378b9237e527;hpb=5c10c6e6d65f086e4a021d358314f377bb97342d;p=jalview.git

diff --git a/forester/java/src/org/forester/io/parsers/util/ParserUtils.java b/forester/java/src/org/forester/io/parsers/util/ParserUtils.java
index 8d65e24..a1f842e 100644
--- a/forester/java/src/org/forester/io/parsers/util/ParserUtils.java
+++ b/forester/java/src/org/forester/io/parsers/util/ParserUtils.java
@@ -234,7 +234,7 @@ public final class ParserUtils {
             final String[] s = name.split( "[_/]" );
             if ( s.length > 1 ) {
                 String str = s[ 1 ];
-                if ( !limit_to_five || ( str.length() < 6 ) ) {
+                if ( ( str.length() < 6 ) || ( !limit_to_five && ( str.length() < 7 ) ) ) {
                     if ( ( str.length() < 5 ) && ( str.startsWith( "RAT" ) || str.startsWith( "PIG" ) ) ) {
                         str = str.substring( 0, 3 );
                     }