X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fio%2Fwriters%2FSequenceWriter.java;h=327f9559331094ea6d5a23e35be9b62bf0a9d053;hb=656be28debec520e0e35a8b311114398a40ea366;hp=b4135d1e7e9291b2d14b3614607cbd048da32b3e;hpb=48f7a89be9d34f1930a1f863e608235cc27184c5;p=jalview.git diff --git a/forester/java/src/org/forester/io/writers/SequenceWriter.java b/forester/java/src/org/forester/io/writers/SequenceWriter.java index b4135d1..327f955 100644 --- a/forester/java/src/org/forester/io/writers/SequenceWriter.java +++ b/forester/java/src/org/forester/io/writers/SequenceWriter.java @@ -5,7 +5,6 @@ import java.io.IOException; import java.io.Writer; import java.util.List; -import org.forester.sequence.BasicSequence; import org.forester.sequence.Sequence; import org.forester.util.ForesterUtil; @@ -15,21 +14,6 @@ public class SequenceWriter { FASTA; } - public static void main( final String[] args ) { - final Sequence s = BasicSequence.createAaSequence( "name", "abcdefghiiklmnap" ); - System.out.println( s.toString() ); - System.out.println( SequenceWriter.toFasta( s, 0 ).toString() ); - System.out.println( SequenceWriter.toFasta( s, 5 ).toString() ); - System.out.println( SequenceWriter.toFasta( s, 8 ).toString() ); - System.out.println( SequenceWriter.toFasta( s, 4 ).toString() ); - System.out.println( SequenceWriter.toFasta( s, 3 ).toString() ); - System.out.println( SequenceWriter.toFasta( s, 2 ).toString() ); - System.out.println( SequenceWriter.toFasta( s, 1 ).toString() ); - System.out.println( SequenceWriter.toFasta( s, 100 ).toString() ); - System.out.println( SequenceWriter.toFasta( s, 15 ).toString() ); - System.out.println( SequenceWriter.toFasta( s, 16 ).toString() ); - } - public static StringBuilder toFasta( final Sequence seq, final int width ) { final StringBuilder sb = new StringBuilder(); sb.append( ">" );