X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fmsa%2FMsaCompactor.java;h=64c69577ba386ce56606f325e5521851ab26800f;hb=9d627b6d40d2f38258ffe2cdebd82a2e8c1b9ea6;hp=469fa317140d8c11f0d966c051b5925e8479d45c;hpb=0f62196182c853236023fce71ca24db42b591a36;p=jalview.git

diff --git a/forester/java/src/org/forester/msa/MsaCompactor.java b/forester/java/src/org/forester/msa/MsaCompactor.java
index 469fa31..64c6957 100644
--- a/forester/java/src/org/forester/msa/MsaCompactor.java
+++ b/forester/java/src/org/forester/msa/MsaCompactor.java
@@ -140,12 +140,13 @@ public class MsaCompactor {
     }
 
     final private void write( final File outfile, final double gr ) throws IOException {
-        writeMsa( outfile + "_" + _msa.getNumberOfSequences() + "_" + _msa.getLength() + "_" + gr + ".aln" );
+        writeMsa( outfile + "_" + _msa.getNumberOfSequences() + "_" + _msa.getLength() + "_"
+                + ForesterUtil.roundToInt( gr * 100 ) + ".fasta" );
     }
 
     final private void writeMsa( final String outfile ) throws IOException {
         final Writer w = ForesterUtil.createBufferedWriter( outfile );
-        _msa.write( w, MSA_FORMAT.PHYLIP );
+        _msa.write( w, MSA_FORMAT.FASTA );
         w.close();
     }