X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fmsa%2FMsaCompactor.java;h=73f0c6300e06da30934abd258a78d3820d25dbda;hb=d4d61f9d2969283e821f650d031c169899fb3870;hp=90b2ccc1cf37fdcec0a6e2875707d9bdb9e5a355;hpb=764e1546f1bcc4f6b52be283bdd801372ed2ee54;p=jalview.git

diff --git a/forester/java/src/org/forester/msa/MsaCompactor.java b/forester/java/src/org/forester/msa/MsaCompactor.java
index 90b2ccc..73f0c63 100644
--- a/forester/java/src/org/forester/msa/MsaCompactor.java
+++ b/forester/java/src/org/forester/msa/MsaCompactor.java
@@ -141,7 +141,7 @@ public class MsaCompactor {
 
     final private void write( final File outfile, final double gr ) throws IOException {
         writeMsa( outfile + "_" + _msa.getNumberOfSequences() + "_" + _msa.getLength() + "_"
-                + ForesterUtil.roundToInt( gr * 100 ) + ".aln" );
+                + ForesterUtil.roundToInt( gr * 100 ) + ".fasta" );
     }
 
     final private void writeMsa( final String outfile ) throws IOException {
@@ -188,19 +188,7 @@ public class MsaCompactor {
     final private DescriptiveStatistics[] calcStats() {
         final DescriptiveStatistics stats[] = calc();
         sort( stats );
-        for( int i = 0; i < stats.length; ++i ) {
-            final DescriptiveStatistics s = stats[ i ];
-            //            System.out.print( s.getDescription() );
-            //            System.out.print( "\t" );
-            //            System.out.print( s.arithmeticMean() );
-            //            System.out.print( "\t(" );
-            //            System.out.print( s.arithmeticMean() );
-            //            System.out.print( ")" );
-            //            System.out.print( "\t" );
-            //            System.out.print( s.getMin() );
-            //            System.out.print( "\t" );
-            //            System.out.print( s.getMax() );
-            //            System.out.println();
+        for( final DescriptiveStatistics s : stats ) {
         }
         return stats;
     }