X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fmsa%2FMsaInferrer.java;h=45fec857ee9bcde6558d702a8a39d78dbfa1db46;hb=e836cdba7ba52df7a886c72842beaaf9a3eea699;hp=55aa7f7e724c92cf9a26d9a32b60751d4ad1c7b3;hpb=656be28debec520e0e35a8b311114398a40ea366;p=jalview.git

diff --git a/forester/java/src/org/forester/msa/MsaInferrer.java b/forester/java/src/org/forester/msa/MsaInferrer.java
index 55aa7f7..45fec85 100644
--- a/forester/java/src/org/forester/msa/MsaInferrer.java
+++ b/forester/java/src/org/forester/msa/MsaInferrer.java
@@ -29,7 +29,7 @@ import java.io.File;
 import java.io.IOException;
 import java.util.List;
 
-import org.forester.sequence.Sequence;
+import org.forester.sequence.MolecularSequence;
 import org.forester.util.SystemCommandExecutor;
 
 public abstract class MsaInferrer {
@@ -49,6 +49,6 @@ public abstract class MsaInferrer {
 
     public abstract Msa infer( File path_to_input_seqs, List<String> opts ) throws IOException, InterruptedException;
 
-    public abstract Msa infer( final List<Sequence> seqs, final List<String> opts ) throws IOException,
-            InterruptedException;
+    public abstract Msa infer( final List<MolecularSequence> seqs, final List<String> opts ) throws IOException,
+    InterruptedException;
 }