X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fmsa%2FMsaInferrer.java;h=8c839f98730e33ff3e4a41f91aa2a815abb8d42d;hb=5309828c338cdf84ef10f70dc2472cf27016a75b;hp=8266648d640dcebb62f6092942592fbd6cc3bd84;hpb=a1f96e88c8d5c06bc64a7b614dd883d696b0fefe;p=jalview.git

diff --git a/forester/java/src/org/forester/msa/MsaInferrer.java b/forester/java/src/org/forester/msa/MsaInferrer.java
index 8266648..8c839f9 100644
--- a/forester/java/src/org/forester/msa/MsaInferrer.java
+++ b/forester/java/src/org/forester/msa/MsaInferrer.java
@@ -29,6 +29,7 @@ import java.io.File;
 import java.io.IOException;
 import java.util.List;
 
+import org.forester.sequence.Sequence;
 import org.forester.util.SystemCommandExecutor;
 
 public abstract class MsaInferrer {
@@ -47,4 +48,7 @@ public abstract class MsaInferrer {
     }
 
     public abstract Msa infer( File path_to_input_seqs, List<String> opts ) throws IOException, InterruptedException;
+
+    public abstract Msa infer( final List<Sequence> seqs, final List<String> opts ) throws IOException,
+            InterruptedException;
 }