X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fmsa%2FMsaMethods.java;h=1a94b74f7ce0fa7d22ec49fe20d5ce39177ad899;hb=fda4b2cd36f7c4d7edf6381268ebcf5fbbc77297;hp=25330e00e1a8ef70491193063b9d7787dacecdd8;hpb=2673a2c9046d3c6ab53c7ba687c743224fb2a6cc;p=jalview.git

diff --git a/forester/java/src/org/forester/msa/MsaMethods.java b/forester/java/src/org/forester/msa/MsaMethods.java
index 25330e0..1a94b74 100644
--- a/forester/java/src/org/forester/msa/MsaMethods.java
+++ b/forester/java/src/org/forester/msa/MsaMethods.java
@@ -168,9 +168,9 @@ public final class MsaMethods {
     }
 
     final public static DescriptiveStatistics calculateEffectiveLengthStatistics( final Msa msa ) {
-        DescriptiveStatistics stats = new BasicDescriptiveStatistics();
+        final DescriptiveStatistics stats = new BasicDescriptiveStatistics();
         for( int row = 0; row < msa.getNumberOfSequences(); ++row ) {
-            Sequence s = msa.getSequence( row );
+            final Sequence s = msa.getSequence( row );
             stats.addValue( s.getLength() - s.getNumberOfGapResidues() );
         }
         return stats;