X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fmsa%2FMsaMethods.java;h=2b470203d611294f1de19114e5226e0102d17208;hb=88718609970e490e94727d12ebbca1270ba2c0a7;hp=881e622dcd51ac042e06fb5d70496bf8c4f08594;hpb=02bf2b081aed88622e3279e816f0aeb45cba546e;p=jalview.git

diff --git a/forester/java/src/org/forester/msa/MsaMethods.java b/forester/java/src/org/forester/msa/MsaMethods.java
index 881e622..2b47020 100644
--- a/forester/java/src/org/forester/msa/MsaMethods.java
+++ b/forester/java/src/org/forester/msa/MsaMethods.java
@@ -107,12 +107,11 @@ public final class MsaMethods {
         _ignored_seqs_ids = new ArrayList<String>();
     }
 
-    public static final DescriptiveStatistics calcNumberOfGapsPer100Stats( final Msa msa ) {
+    public static final DescriptiveStatistics calcNumberOfGapsStats( final Msa msa ) {
         final int[] gaps = calcNumberOfGapsInMsa( msa );
         final DescriptiveStatistics stats = new BasicDescriptiveStatistics();
-        final double n = 100.0 / msa.getLength();
         for( final int gap : gaps ) {
-            stats.addValue( n * gap );
+            stats.addValue(  gap );
         }
         return stats;
     }