X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fmsa%2FResampleableMsa.java;h=a44c5d1824be171644180932256279b831fca0eb;hb=e836cdba7ba52df7a886c72842beaaf9a3eea699;hp=4427ea7fe47ffed8f652587851c3673c1e9fa4be;hpb=db8b10baefc3e1b5fee9b8192657ecc97ca5b86d;p=jalview.git

diff --git a/forester/java/src/org/forester/msa/ResampleableMsa.java b/forester/java/src/org/forester/msa/ResampleableMsa.java
index 4427ea7..a44c5d1 100644
--- a/forester/java/src/org/forester/msa/ResampleableMsa.java
+++ b/forester/java/src/org/forester/msa/ResampleableMsa.java
@@ -26,7 +26,7 @@
 package org.forester.msa;
 
 import org.forester.sequence.BasicSequence;
-import org.forester.sequence.Sequence;
+import org.forester.sequence.MolecularSequence;
 
 public final class ResampleableMsa extends BasicMsa {
 
@@ -47,7 +47,7 @@ public final class ResampleableMsa extends BasicMsa {
     final public void resample( final int[] resampled_column_positions ) {
         if ( resampled_column_positions.length != getLength() ) {
             throw new IllegalArgumentException( "illegal attempt to use " + resampled_column_positions.length
-                    + " resampled column positions on msa of length " + getLength() );
+                                                + " resampled column positions on msa of length " + getLength() );
         }
         _resampled_column_positions = resampled_column_positions;
     }
@@ -58,7 +58,7 @@ public final class ResampleableMsa extends BasicMsa {
     }
 
     @Override
-    public Sequence getSequence( final int row ) {
+    public MolecularSequence getSequence( final int row ) {
         return new BasicSequence( getIdentifier( row ), getSequenceAsString( row ).toString(), getType() );
     }
 }