X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fpccx%2FExternalNodeBasedCoverage.java;h=661fd0a21b1b532afe898ae6638f0b9ed6a63a07;hb=03e7c823c2f9f2b9766bf486a164a8eec69d5214;hp=ee46c40808d00a3a859224f5fde9062fe3785d1f;hpb=48f7a89be9d34f1930a1f863e608235cc27184c5;p=jalview.git diff --git a/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverage.java b/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverage.java index ee46c40..661fd0a 100644 --- a/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverage.java +++ b/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverage.java @@ -5,7 +5,7 @@ // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved -// +// // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either @@ -15,13 +15,13 @@ // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. -// +// // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com -// WWW: www.phylosoft.org/forester +// WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.pccx; @@ -56,6 +56,7 @@ public class ExternalNodeBasedCoverage implements Coverage { _min = stats.getMin(); } + @Override public String asString() { final StringBuffer sb = new StringBuffer(); if ( getN() == 1 ) { @@ -90,6 +91,7 @@ public class ExternalNodeBasedCoverage implements Coverage { return _n; } + @Override public double getScore() { return getAvarageNormalizedScore(); }