X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fpccx%2FExternalNodeBasedCoverageMethod.java;h=76b31345017ee21fd2e459e5553f859a82ffb5c5;hb=5b0302dbbd662402f68e5dee1c1e8d457144f53f;hp=a88018ffd661d52174c5531d030be3782c1ba1eb;hpb=eee996a6476a1e3d84c07f8f690dcde3ff4b2ef5;p=jalview.git diff --git a/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethod.java b/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethod.java index a88018f..76b3134 100644 --- a/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethod.java +++ b/forester/java/src/org/forester/pccx/ExternalNodeBasedCoverageMethod.java @@ -22,7 +22,7 @@ // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA // // Contact: phylosoft @ gmail . com -// WWW: www.phylosoft.org/forester +// WWW: https://sites.google.com/site/cmzmasek/home/software/forester package org.forester.pccx; @@ -120,13 +120,13 @@ public class ExternalNodeBasedCoverageMethod implements CoverageCalculationMetho final PhylogenyNode node = ( PhylogenyNode ) element.getKey(); final double normalized_value = ( Double ) element.getValue() * normalization_factor; PhylogenyMethods.setBranchColorValue( node, ForesterUtil - .calcColor( normalized_value, - min, - max, - median, - ExternalNodeBasedCoverageMethod.MINIMAL_COV_COLOR, - ExternalNodeBasedCoverageMethod.MAXIMAL_COV_COLOR, - ExternalNodeBasedCoverageMethod.MEAN_COVERAGE_COLOR ) ); + .calcColor( normalized_value, + min, + max, + median, + ExternalNodeBasedCoverageMethod.MINIMAL_COV_COLOR, + ExternalNodeBasedCoverageMethod.MAXIMAL_COV_COLOR, + ExternalNodeBasedCoverageMethod.MEAN_COVERAGE_COLOR ) ); } PhylogenyMethods.postorderBranchColorAveragingExternalNodeBased( phylogeny ); }