X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fphylogeny%2FPhylogeny.java;h=3679cd510a7760f12805f8d65802a6540a028ab4;hb=f8ecfc1d254f7f413ee5c47fbb012b609f7f4fd1;hp=723fab8a478ed57f68ffd1d968e14fceeeb921d9;hpb=da91573ed6cc107d27b2a18ec31c88a1447a4e80;p=jalview.git

diff --git a/forester/java/src/org/forester/phylogeny/Phylogeny.java b/forester/java/src/org/forester/phylogeny/Phylogeny.java
index 723fab8..3679cd5 100644
--- a/forester/java/src/org/forester/phylogeny/Phylogeny.java
+++ b/forester/java/src/org/forester/phylogeny/Phylogeny.java
@@ -489,6 +489,20 @@ public class Phylogeny {
         return nodes;
     }
 
+    public List<PhylogenyNode> getNodesViaGeneName( final String seq_name ) {
+        if ( isEmpty() ) {
+            return null;
+        }
+        final List<PhylogenyNode> nodes = new ArrayList<PhylogenyNode>();
+        for( final PhylogenyNodeIterator iter = iteratorPreorder(); iter.hasNext(); ) {
+            final PhylogenyNode n = iter.next();
+            if ( n.getNodeData().isHasSequence() && n.getNodeData().getSequence().getGeneName().equals( seq_name ) ) {
+                nodes.add( n );
+            }
+        }
+        return nodes;
+    }
+
     public List<PhylogenyNode> getNodesViaTaxonomyCode( final String taxonomy_code ) {
         if ( isEmpty() ) {
             return null;