X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fphylogeny%2Fdata%2FTaxonomy.java;h=2e1514997aaf455cd6c8d0ada28b5a308b7eba5e;hb=cdad7364d81a04e88c3c7dc998cceede129286f4;hp=26ed9409f6587a978db07d0cd11d32cbf803544a;hpb=7bbe60fa14da3f582733162744740cd51c5e783c;p=jalview.git

diff --git a/forester/java/src/org/forester/phylogeny/data/Taxonomy.java b/forester/java/src/org/forester/phylogeny/data/Taxonomy.java
index 26ed940..2e15149 100644
--- a/forester/java/src/org/forester/phylogeny/data/Taxonomy.java
+++ b/forester/java/src/org/forester/phylogeny/data/Taxonomy.java
@@ -318,11 +318,21 @@ public class Taxonomy implements PhylogenyData, MultipleUris, Comparable<Taxonom
         _synonyms = synonyms;
     }
 
-    public void setTaxonomyCode( final String taxonomy_code ) throws PhyloXmlDataFormatException {
+    public void setTaxonomyCode( String taxonomy_code ) throws PhyloXmlDataFormatException {
         if ( !ForesterUtil.isEmpty( taxonomy_code )
                 && !PhyloXmlUtil.TAXOMONY_CODE_PATTERN.matcher( taxonomy_code ).matches() ) {
             throw new PhyloXmlDataFormatException( "illegal taxonomy code: [" + taxonomy_code + "]" );
         }
+        //~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
+        //TODO FIXME (added on 13-11-18) remove me eventually
+        if ( taxonomy_code.equals( "ACIBL" ) ) {
+            taxonomy_code = "KORVE";
+        }
+        else if ( taxonomy_code.equals( "PYRKO" ) ) {
+            taxonomy_code = "THEKO";
+        }
+        //TODO FIXME (added on 13-11-18) remove me eventually
+        //~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
         _taxonomy_code = taxonomy_code;
     }