X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fprotein%2FBinaryDomainCombination.java;h=4013904da9585e576885900c376aa3b8df7935e0;hb=e836cdba7ba52df7a886c72842beaaf9a3eea699;hp=1098644a10d63e1032c2994598acde03b6cc29d6;hpb=656be28debec520e0e35a8b311114398a40ea366;p=jalview.git

diff --git a/forester/java/src/org/forester/protein/BinaryDomainCombination.java b/forester/java/src/org/forester/protein/BinaryDomainCombination.java
index 1098644..4013904 100644
--- a/forester/java/src/org/forester/protein/BinaryDomainCombination.java
+++ b/forester/java/src/org/forester/protein/BinaryDomainCombination.java
@@ -29,23 +29,17 @@ public interface BinaryDomainCombination extends Comparable<BinaryDomainCombinat
 
     public static final String SEPARATOR = "=";
 
-    public DomainId getId0();
-
-    public DomainId getId1();
-
-    public abstract StringBuffer toGraphDescribingLanguage( final OutputFormat format,
-                                                            final String node_attribute,
-                                                            String edge_attribute );
-
-    /**
-     * This has to return a String representation
-     * in the following format:
-     * id0 - id1
-     * 
-     * @return a String representation in the form id0 - id1
-     */
-    @Override
-    public String toString();
+    public String getId0();
+
+    public String getId1();
+
+    short getId0Code();
+
+    short getId1Code();
+
+    public StringBuffer toGraphDescribingLanguage( final OutputFormat format,
+                                                   final String node_attribute,
+                                                   String edge_attribute );
 
     public static enum DomainCombinationType {
         BASIC, DIRECTED, DIRECTED_ADJACTANT;