X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsdi%2FSDI.java;h=59cc489f1bf70270d1897b2292e8f349d3cefc9f;hb=0ee466206ea1e3ac3025df1110538e3815c160b4;hp=c783ce095332f7f9a899367dc059d45142518c1f;hpb=4cefcbf8c547e86e56ed503f0a3d1a06e462e60e;p=jalview.git

diff --git a/forester/java/src/org/forester/sdi/SDI.java b/forester/java/src/org/forester/sdi/SDI.java
index c783ce0..59cc489 100644
--- a/forester/java/src/org/forester/sdi/SDI.java
+++ b/forester/java/src/org/forester/sdi/SDI.java
@@ -214,8 +214,9 @@ public abstract class SDI {
      * links (sets the field "link" of PhylogenyNode) each external
      * PhylogenyNode of gene_tree to the external PhylogenyNode of species_tree
      * which has the same species name.
+     * @throws SDIException 
      */
-    void linkNodesOfG() {
+    void linkNodesOfG() throws SDIException {
         final Map<String, PhylogenyNode> speciestree_ext_nodes = new HashMap<String, PhylogenyNode>();
         final TaxonomyComparisonBase tax_comp_base = determineTaxonomyComparisonBase();
         // Put references to all external nodes of the species tree into a map.
@@ -301,6 +302,26 @@ public abstract class SDI {
     }
 
     public enum TaxonomyComparisonBase {
-        ID, CODE, SCIENTIFIC_NAME
+        ID {
+
+            @Override
+            public String toString() {
+                return "taxonomy id";
+            }
+        },
+        CODE {
+
+            @Override
+            public String toString() {
+                return "taxonomy code/mnemonic";
+            }
+        },
+        SCIENTIFIC_NAME {
+
+            @Override
+            public String toString() {
+                return "scientific name";
+            }
+        }
     }
 }