X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsdi%2FSDIutil.java;h=4e12ae6713b9b1d7910b865357d2a656a1fd7aac;hb=5cad5dbd4f9e8cf09a123d4ee490cf314c05fd2f;hp=077f81852bc97a376063db619750f845e1335d0f;hpb=f0e9864f2a7aa03931cc4c243ca9819bd9bdb9a9;p=jalview.git diff --git a/forester/java/src/org/forester/sdi/SDIutil.java b/forester/java/src/org/forester/sdi/SDIutil.java index 077f818..4e12ae6 100644 --- a/forester/java/src/org/forester/sdi/SDIutil.java +++ b/forester/java/src/org/forester/sdi/SDIutil.java @@ -73,7 +73,7 @@ public class SDIutil { final boolean replace_undescores_in_nhx_trees, final boolean ignore_quotes_in_nhx_trees, final TAXONOMY_EXTRACTION taxonomy_extraction_in_nhx_trees ) - throws FileNotFoundException, PhyloXmlDataFormatException, IOException, SDIException { + throws FileNotFoundException, PhyloXmlDataFormatException, IOException, SDIException { Phylogeny species_tree; final PhylogenyFactory factory = ParserBasedPhylogenyFactory.getInstance(); final PhylogenyParser p = ParserUtils.createParserDependingOnFileType( species_tree_file, true ); @@ -99,9 +99,9 @@ public class SDIutil { switch ( comp_base ) { case SCIENTIFIC_NAME: PhylogenyMethods - .transferNodeNameToField( species_tree, - PhylogenyMethods.PhylogenyNodeField.TAXONOMY_SCIENTIFIC_NAME, - true ); + .transferNodeNameToField( species_tree, + PhylogenyMethods.PhylogenyNodeField.TAXONOMY_SCIENTIFIC_NAME, + true ); break; case CODE: PhylogenyMethods.transferNodeNameToField( species_tree,