X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsequence%2FMolecularSequence.java;h=d4f9bf37fa9a0c90f7fc21d023fb5dcc40bd8e3a;hb=1706deea223bc1a30d170596192d726b6847b7eb;hp=696a1fc7490d5c926ef096b7949d782e8868f61c;hpb=6b3ec0cd978bd692dfae1de3e076963283fdf322;p=jalview.git

diff --git a/forester/java/src/org/forester/sequence/MolecularSequence.java b/forester/java/src/org/forester/sequence/MolecularSequence.java
index 696a1fc..d4f9bf3 100644
--- a/forester/java/src/org/forester/sequence/MolecularSequence.java
+++ b/forester/java/src/org/forester/sequence/MolecularSequence.java
@@ -33,7 +33,7 @@ public interface MolecularSequence {
     public static final char   GAP             = '-';
     public static final String GAP_STR         = Character.toString( GAP );
     public static final char   TERMINATE       = '*';
-    static final String        AA_REGEXP       = "[^ARNDBCQEZGHILKMFPSTWYVXU\\-\\*]";
+    static final String        AA_REGEXP       = "[^ARNDBCQEZGHILKMFPSTWYVXUO\\-\\*]";
     static final String        DNA_REGEXP      = "[^ACGTRYMKWSN\\-\\*]";
     static final String        RNA_REGEXP      = "[^ACGURYMKWSN\\-\\*]";
 
@@ -54,6 +54,6 @@ public interface MolecularSequence {
     public abstract TYPE getType();
 
     public enum TYPE {
-        RNA, DNA, AA;
+        RNA, DNA, AA, GENERAL;
     }
 }
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