X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsurfacing%2FCombinationsBasedPairwiseDomainSimilarity.java;h=a98298d9afec4fd929686ee34948aa7669807890;hb=d605114bdf420c6cb680b02bb10ea25f09db769c;hp=3b0c6dcf0d6164c2df9140a0413fe657a71d346f;hpb=eee996a6476a1e3d84c07f8f690dcde3ff4b2ef5;p=jalview.git

diff --git a/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java b/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java
index 3b0c6dc..a98298d 100644
--- a/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java
+++ b/forester/java/src/org/forester/surfacing/CombinationsBasedPairwiseDomainSimilarity.java
@@ -23,15 +23,15 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 
 public class CombinationsBasedPairwiseDomainSimilarity implements PairwiseDomainSimilarity {
 
-    private final int    _same_domains;
-    private final int    _different_domains;
     private final int    _difference_in_counts;
+    private final int    _different_domains;
+    private final int    _same_domains;
     private final double _score;
 
     public CombinationsBasedPairwiseDomainSimilarity( final int same_domains,