X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsurfacing%2FCountsBasedPairwiseDomainSimilarity.java;h=4de0d2851a3392c07063546ab83d145359028895;hb=5383c68bc6041a8e8eaab4258e7901b64d4cc081;hp=b1abfeb2d3c5692841f99e10a7e83b68223b2336;hpb=48f7a89be9d34f1930a1f863e608235cc27184c5;p=jalview.git diff --git a/forester/java/src/org/forester/surfacing/CountsBasedPairwiseDomainSimilarity.java b/forester/java/src/org/forester/surfacing/CountsBasedPairwiseDomainSimilarity.java index b1abfeb..4de0d28 100644 --- a/forester/java/src/org/forester/surfacing/CountsBasedPairwiseDomainSimilarity.java +++ b/forester/java/src/org/forester/surfacing/CountsBasedPairwiseDomainSimilarity.java @@ -7,7 +7,7 @@ // Copyright (C) 2008-2009 Christian M. Zmasek // Copyright (C) 2008-2009 Burnham Institute for Medical Research // All rights reserved -// +// // This library is free software; you can redistribute it and/or // modify it under the terms of the GNU Lesser General Public // License as published by the Free Software Foundation; either @@ -17,7 +17,7 @@ // but WITHOUT ANY WARRANTY; without even the implied warranty of // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU // Lesser General Public License for more details. -// +// // You should have received a copy of the GNU Lesser General Public // License along with this library; if not, write to the Free Software // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA @@ -55,10 +55,12 @@ public class CountsBasedPairwiseDomainSimilarity implements PairwiseDomainSimila * Returns (counts for domain 1) minus (counts for domain 2). * */ + @Override public int getDifferenceInCounts() { return _copy_number_difference; } + @Override public double getSimilarityScore() { return _score; }