X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsurfacing%2FDirectedBinaryDomainCombination.java;h=68e570da4f4a9512f37a567a61ffc04883ef6b5c;hb=40c926ee11c43ef8f7e42607f3c4fdef3555b8be;hp=c47a278f9acf1358d26d0cda4790bc070e01b753;hpb=eee996a6476a1e3d84c07f8f690dcde3ff4b2ef5;p=jalview.git

diff --git a/forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java b/forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java
index c47a278..68e570d 100644
--- a/forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java
+++ b/forester/java/src/org/forester/surfacing/DirectedBinaryDomainCombination.java
@@ -22,23 +22,24 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 
+import org.forester.protein.BinaryDomainCombination;
+
 public class DirectedBinaryDomainCombination extends BasicBinaryDomainCombination {
 
-    public DirectedBinaryDomainCombination( final DomainId n_terminal, final DomainId c_terminal ) {
+    public DirectedBinaryDomainCombination( final String n_terminal, final String c_terminal ) {
         super();
         if ( ( n_terminal == null ) || ( c_terminal == null ) ) {
             throw new IllegalArgumentException( "attempt to create binary domain combination using null" );
         }
-        _id_0 = n_terminal;
-        _id_1 = c_terminal;
-    }
-
-    public DirectedBinaryDomainCombination( final String n_terminal, final String c_terminal ) {
-        this( new DomainId( n_terminal ), new DomainId( c_terminal ) );
+        //_id0 = n_terminal;
+        //_id1 = c_terminal;
+       // _data = n_terminal + SEPARATOR + c_terminal;
+        _id0 = getId( n_terminal );
+        _id1 = getId( c_terminal );
     }
 
     public static BinaryDomainCombination createInstance( final String ids ) {