X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsurfacing%2FDirectedCombinableDomains.java;h=9955eece63271a34e6ac9bb74a6b20f30f720f2b;hb=f47b5de663d2ca59a4d53587ea8d5cd20c594db2;hp=16c29402bebd448e4109a100e86be6015b8877e8;hpb=656be28debec520e0e35a8b311114398a40ea366;p=jalview.git

diff --git a/forester/java/src/org/forester/surfacing/DirectedCombinableDomains.java b/forester/java/src/org/forester/surfacing/DirectedCombinableDomains.java
index 16c2940..9955eec 100644
--- a/forester/java/src/org/forester/surfacing/DirectedCombinableDomains.java
+++ b/forester/java/src/org/forester/surfacing/DirectedCombinableDomains.java
@@ -30,19 +30,18 @@ import java.util.ArrayList;
 import java.util.List;
 
 import org.forester.protein.BinaryDomainCombination;
-import org.forester.protein.DomainId;
 import org.forester.species.Species;
 
 public class DirectedCombinableDomains extends BasicCombinableDomains {
 
-    public DirectedCombinableDomains( final DomainId n_terminal_key_domain, final Species species ) {
+    public DirectedCombinableDomains( final String n_terminal_key_domain, final Species species ) {
         super( n_terminal_key_domain, species );
     }
 
     @Override
     public List<BinaryDomainCombination> toBinaryDomainCombinations() {
         final List<BinaryDomainCombination> binary_combinations = new ArrayList<BinaryDomainCombination>( getNumberOfCombinableDomains() );
-        for( final DomainId domain : getCombiningDomains().keySet() ) {
+        for( final String domain : getCombiningDomains().keySet() ) {
             // Precondition (!): key domain is most upstream domain.
             //TODO ensure this is true.
             binary_combinations.add( new DirectedBinaryDomainCombination( getKeyDomain(), domain ) );