X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsurfacing%2FDomainParsimonyCalculator.java;h=b20ee0f1dbd5abfcddfc42c0727eddbdf49ad6b1;hb=63685dd0262a506f0bf17cba6be1aa1ada5330f3;hp=4b5f1bb112f78ec5cddb2bcd53ee871eb676e3f6;hpb=10297bd8b8a4b4ab198a17a42fc6ff24ae2ed49b;p=jalview.git

diff --git a/forester/java/src/org/forester/surfacing/DomainParsimonyCalculator.java b/forester/java/src/org/forester/surfacing/DomainParsimonyCalculator.java
index 4b5f1bb..b20ee0f 100644
--- a/forester/java/src/org/forester/surfacing/DomainParsimonyCalculator.java
+++ b/forester/java/src/org/forester/surfacing/DomainParsimonyCalculator.java
@@ -543,7 +543,7 @@ public final class DomainParsimonyCalculator {
         }
         return new DomainParsimonyCalculator( phylogeny, gwcd_list, domain_id_to_secondary_features_map );
     }
-
+    @SuppressWarnings("unchecked")
     public static CharacterStateMatrix<BinaryStates> createMatrixOfBinaryDomainCombinationPresenceOrAbsence( final List<GenomeWideCombinableDomains> gwcd_list ) {
         if ( gwcd_list.isEmpty() ) {
             throw new IllegalArgumentException( "genome wide combinable domains list is empty" );
@@ -662,7 +662,7 @@ public final class DomainParsimonyCalculator {
         }
         return matrix;
     }
-
+    @SuppressWarnings("unchecked")
     public static CharacterStateMatrix<BinaryStates> createMatrixOfSecondaryFeatureBinaryDomainCombinationPresenceOrAbsence( final List<GenomeWideCombinableDomains> gwcd_list,
                                                                                                                              final Map<String, String> domain_id_to_second_features_map ) {
         if ( gwcd_list.isEmpty() ) {