X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsurfacing%2FDomainSimilarityCalculator.java;h=3983dd65cd9b97f03139c2fec11705bd0717dae5;hb=b6366fd2ac865514d2ceacb63432dac532147a85;hp=4a4c91fc84a5c3450a4adcc5c8eb92ceb80214b9;hpb=48f7a89be9d34f1930a1f863e608235cc27184c5;p=jalview.git

diff --git a/forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java b/forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java
index 4a4c91f..3983dd6 100644
--- a/forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java
+++ b/forester/java/src/org/forester/surfacing/DomainSimilarityCalculator.java
@@ -7,7 +7,7 @@
 // Copyright (C) 2008-2009 Christian M. Zmasek
 // Copyright (C) 2008-2009 Burnham Institute for Medical Research
 // All rights reserved
-// 
+//
 // This library is free software; you can redistribute it and/or
 // modify it under the terms of the GNU Lesser General Public
 // License as published by the Free Software Foundation; either
@@ -17,13 +17,13 @@
 // but WITHOUT ANY WARRANTY; without even the implied warranty of
 // MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
 // Lesser General Public License for more details.
-// 
+//
 // You should have received a copy of the GNU Lesser General Public
 // License along with this library; if not, write to the Free Software
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.surfacing;
 
@@ -37,11 +37,11 @@ public interface DomainSimilarityCalculator {
                                                               final boolean ignore_domains_without_combinations_in_any_genome,
                                                               final boolean ignore_domains_specific_to_one_genome );;
 
-    public static enum Detailedness {
-        BASIC, LIST_COMBINING_DOMAIN_FOR_EACH_SPECIES, PUNCTILIOUS
-    }
+                                                              public static enum Detailedness {
+                                                                  BASIC, LIST_COMBINING_DOMAIN_FOR_EACH_SPECIES, PUNCTILIOUS
+                                                              }
 
-    public static enum GoAnnotationOutput {
-        NONE, ALL
-    }
+                                                              public static enum GoAnnotationOutput {
+                                                                  ALL, NONE
+                                                              }
 }