X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsurfacing%2FGenomeWideCombinableDomains.java;h=4dbe7188c6c8bec9479152d96d14db0e549fd497;hb=e0d3ddb03137a2f01528e995186c657d5067e673;hp=f444ff7ca95282d854edea01fd741f67c8cd41ec;hpb=656be28debec520e0e35a8b311114398a40ea366;p=jalview.git

diff --git a/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java b/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java
index f444ff7..4dbe718 100644
--- a/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java
+++ b/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java
@@ -32,28 +32,27 @@ import java.util.SortedSet;
 
 import org.forester.protein.BinaryDomainCombination;
 import org.forester.protein.BinaryDomainCombination.DomainCombinationType;
-import org.forester.protein.DomainId;
 import org.forester.species.Species;
 import org.forester.util.DescriptiveStatistics;
 
 public interface GenomeWideCombinableDomains {
 
-    public boolean contains( DomainId key_id );
+    public boolean contains( String key_id );
 
-    public CombinableDomains get( DomainId key_id );
+    public CombinableDomains get( String key_id );
 
-    public SortedMap<DomainId, CombinableDomains> getAllCombinableDomainsIds();
+    public SortedMap<String, CombinableDomains> getAllCombinableDomainsIds();
 
     /**
      * This should return all domains ids present in the genome.
      * 
      * @return a sorted set of domains ids
      */
-    public SortedSet<DomainId> getAllDomainIds();
+    public SortedSet<String> getAllDomainIds();
 
     public DomainCombinationType getDomainCombinationType();
 
-    SortedSet<DomainId> getMostPromiscuosDomain();
+    SortedSet<String> getMostPromiscuosDomain();
 
     /**
      * This should return a statistic for per domain