X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsurfacing%2FGenomeWideCombinableDomains.java;h=810e409b36f8cfa4c7ccda31fdafae911ffc19a3;hb=1d144f35479f96cb36c5247d9711e22ed234651a;hp=4dbe7188c6c8bec9479152d96d14db0e549fd497;hpb=87d34f343d0262cd0c009c6f1da058a5a217bc64;p=jalview.git diff --git a/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java b/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java index 4dbe718..810e409 100644 --- a/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java +++ b/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java @@ -52,8 +52,6 @@ public interface GenomeWideCombinableDomains { public DomainCombinationType getDomainCombinationType(); - SortedSet getMostPromiscuosDomain(); - /** * This should return a statistic for per domain * promiscuity in a genome. @@ -75,7 +73,9 @@ public interface GenomeWideCombinableDomains { public StringBuilder toStringBuilder( GenomeWideCombinableDomainsSortOrder order ); + SortedSet getMostPromiscuosDomain(); + public static enum GenomeWideCombinableDomainsSortOrder { - ALPHABETICAL_KEY_ID, KEY_DOMAIN_PROTEINS_COUNT, KEY_DOMAIN_COUNT, COMBINATIONS_COUNT + ALPHABETICAL_KEY_ID, COMBINATIONS_COUNT, KEY_DOMAIN_COUNT, KEY_DOMAIN_PROTEINS_COUNT } }