X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsurfacing%2FGenomeWideCombinableDomains.java;h=81fd861a4322ca726d261c258d49ad47792227f1;hb=cb49ee5684c6907b3161db82ff9aea72961b8548;hp=4dbe7188c6c8bec9479152d96d14db0e549fd497;hpb=87d34f343d0262cd0c009c6f1da058a5a217bc64;p=jalview.git

diff --git a/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java b/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java
index 4dbe718..81fd861 100644
--- a/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java
+++ b/forester/java/src/org/forester/surfacing/GenomeWideCombinableDomains.java
@@ -45,19 +45,17 @@ public interface GenomeWideCombinableDomains {
 
     /**
      * This should return all domains ids present in the genome.
-     * 
+     *
      * @return a sorted set of domains ids
      */
     public SortedSet<String> getAllDomainIds();
 
     public DomainCombinationType getDomainCombinationType();
 
-    SortedSet<String> getMostPromiscuosDomain();
-
     /**
-     * This should return a statistic for per domain 
+     * This should return a statistic for per domain
      * promiscuity in a genome.
-     * 
+     *
      * @return descriptive statistics for per domain promiscuity in a genome
      */
     public DescriptiveStatistics getPerGenomeDomainPromiscuityStatistics();
@@ -68,14 +66,16 @@ public interface GenomeWideCombinableDomains {
 
     /**
      * This should return all binary domain combinations present in the genome.
-     * 
+     *
      * @return a sorted set of binary domain combinations
      */
     public SortedSet<BinaryDomainCombination> toBinaryDomainCombinations();
 
     public StringBuilder toStringBuilder( GenomeWideCombinableDomainsSortOrder order );
 
+    SortedSet<String> getMostPromiscuosDomain();
+
     public static enum GenomeWideCombinableDomainsSortOrder {
-        ALPHABETICAL_KEY_ID, KEY_DOMAIN_PROTEINS_COUNT, KEY_DOMAIN_COUNT, COMBINATIONS_COUNT
+        ALPHABETICAL_KEY_ID, COMBINATIONS_COUNT, KEY_DOMAIN_COUNT, KEY_DOMAIN_PROTEINS_COUNT
     }
 }