X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsurfacing%2FPairwiseGenomeComparator.java;h=07ece5bae14277fcd1a5c96e5cc933d6f3193de3;hb=1c57d9dd98190445f28ff5b2d447614fb14dd1aa;hp=46998699a0e6b7ff06b6c9661f4472ae5d1438c6;hpb=0898ccf757a9e1b3c10f0a8ad51829eb809d3062;p=jalview.git

diff --git a/forester/java/src/org/forester/surfacing/PairwiseGenomeComparator.java b/forester/java/src/org/forester/surfacing/PairwiseGenomeComparator.java
index 4699869..07ece5b 100644
--- a/forester/java/src/org/forester/surfacing/PairwiseGenomeComparator.java
+++ b/forester/java/src/org/forester/surfacing/PairwiseGenomeComparator.java
@@ -100,7 +100,7 @@ public class PairwiseGenomeComparator {
                                             final boolean write_pairwise_comparisons,
                                             final Map<String, Integer> tax_code_to_id_map,
                                             final boolean calc_similarity_scores,
-                                            Phylogeny phy ) {
+                                            final Phylogeny phy ) {
         init();
         final BasicSymmetricalDistanceMatrix domain_distance_scores_means = new BasicSymmetricalDistanceMatrix( number_of_genomes );
         final BasicSymmetricalDistanceMatrix shared_domains_based_distances = new BasicSymmetricalDistanceMatrix( number_of_genomes );