X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Fsurfacing%2FSurfacingUtil.java;h=05a910121eb8af9ba7b5d88aaa426820ed296ce6;hb=09a8c723e9ab220999f25c6be635282f18186be7;hp=3b52234c5eb90259dfac140570e1d1b45822e288;hpb=b84a8ba7a9f12b179ae2a0c83bf8dfd8d1e97540;p=jalview.git diff --git a/forester/java/src/org/forester/surfacing/SurfacingUtil.java b/forester/java/src/org/forester/surfacing/SurfacingUtil.java index 3b52234..05a9101 100644 --- a/forester/java/src/org/forester/surfacing/SurfacingUtil.java +++ b/forester/java/src/org/forester/surfacing/SurfacingUtil.java @@ -60,7 +60,6 @@ import org.forester.evoinference.matrix.character.CharacterStateMatrix; import org.forester.evoinference.matrix.character.CharacterStateMatrix.BinaryStates; import org.forester.evoinference.matrix.character.CharacterStateMatrix.Format; import org.forester.evoinference.matrix.character.CharacterStateMatrix.GainLossStates; -import org.forester.evoinference.matrix.distance.BasicSymmetricalDistanceMatrix; import org.forester.evoinference.matrix.distance.DistanceMatrix; import org.forester.go.GoId; import org.forester.go.GoNameSpace; @@ -246,7 +245,7 @@ public final class SurfacingUtil { final DistanceMatrix distance ) { checkForOutputFileWriteability( nj_tree_outfile ); final NeighborJoining nj = NeighborJoining.createInstance(); - final Phylogeny phylogeny = nj.execute( ( BasicSymmetricalDistanceMatrix ) distance ); + final Phylogeny phylogeny = nj.execute( ( DistanceMatrix ) distance ); phylogeny.setName( nj_tree_outfile.getName() ); writePhylogenyToFile( phylogeny, nj_tree_outfile.toString() ); return phylogeny;