X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Ftest%2Fexamples%2FExample4.java;h=2c5cb175ad06c513cf5d3079b24718f7240e9d2c;hb=038c34792757a86f24296de5683e722fab3f9307;hp=b363ab35e7d2091ad0fe3d26abea68fe6af46475;hpb=cc9d475aad3b7f53b27ee8f048c16398bdba96b5;p=jalview.git

diff --git a/forester/java/src/org/forester/test/examples/Example4.java b/forester/java/src/org/forester/test/examples/Example4.java
index b363ab3..2c5cb17 100644
--- a/forester/java/src/org/forester/test/examples/Example4.java
+++ b/forester/java/src/org/forester/test/examples/Example4.java
@@ -30,8 +30,10 @@ import java.io.File;
 import java.io.IOException;
 
 import org.forester.io.parsers.PhylogenyParser;
+import org.forester.io.parsers.util.ParserUtils;
 import org.forester.io.writers.PhylogenyWriter;
 import org.forester.phylogeny.Phylogeny;
+import org.forester.phylogeny.PhylogenyMethods;
 import org.forester.util.ForesterUtil;
 
 public class Example4 {
@@ -41,14 +43,14 @@ public class Example4 {
         final File treefile = new File( "/home/czmasek/tol_117_TEST.xml" );
         PhylogenyParser parser = null;
         try {
-            parser = ForesterUtil.createParserDependingOnFileType( treefile, true );
+            parser = ParserUtils.createParserDependingOnFileType( treefile, true );
         }
         catch ( final IOException e ) {
             e.printStackTrace();
         }
         Phylogeny[] phys = null;
         try {
-            phys = ForesterUtil.readPhylogenies( parser, treefile );
+            phys = PhylogenyMethods.readPhylogenies( parser, treefile );
         }
         catch ( final IOException e ) {
             e.printStackTrace();