X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Ftest%2Fexamples%2FExample4.java;h=7f35850cdb0acc8f6ef2f5e2a1e610f019d0472c;hb=b528989f688291ba7615867e5322090ec42096d8;hp=b363ab35e7d2091ad0fe3d26abea68fe6af46475;hpb=ae2893aca6082d15fc6421aee44c3a089976bb87;p=jalview.git

diff --git a/forester/java/src/org/forester/test/examples/Example4.java b/forester/java/src/org/forester/test/examples/Example4.java
index b363ab3..7f35850 100644
--- a/forester/java/src/org/forester/test/examples/Example4.java
+++ b/forester/java/src/org/forester/test/examples/Example4.java
@@ -22,7 +22,7 @@
 // Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
 //
 // Contact: phylosoft @ gmail . com
-// WWW: www.phylosoft.org/forester
+// WWW: https://sites.google.com/site/cmzmasek/home/software/forester
 
 package org.forester.test.examples;
 
@@ -30,8 +30,10 @@ import java.io.File;
 import java.io.IOException;
 
 import org.forester.io.parsers.PhylogenyParser;
+import org.forester.io.parsers.util.ParserUtils;
 import org.forester.io.writers.PhylogenyWriter;
 import org.forester.phylogeny.Phylogeny;
+import org.forester.phylogeny.PhylogenyMethods;
 import org.forester.util.ForesterUtil;
 
 public class Example4 {
@@ -41,14 +43,14 @@ public class Example4 {
         final File treefile = new File( "/home/czmasek/tol_117_TEST.xml" );
         PhylogenyParser parser = null;
         try {
-            parser = ForesterUtil.createParserDependingOnFileType( treefile, true );
+            parser = ParserUtils.createParserDependingOnFileType( treefile, true );
         }
         catch ( final IOException e ) {
             e.printStackTrace();
         }
         Phylogeny[] phys = null;
         try {
-            phys = ForesterUtil.readPhylogenies( parser, treefile );
+            phys = PhylogenyMethods.readPhylogenies( parser, treefile );
         }
         catch ( final IOException e ) {
             e.printStackTrace();