X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Ftools%2FPhylogenyDecorator.java;h=57ef9f04a7acb3a10f76eb8abaff32ba904150b7;hb=41ea5973f93687513d29e5b7cad1abff8f3adb4b;hp=085b9d3b2f77c74de99e87da6845120b26abbbac;hpb=789f3450d14e1f922072f4288833afab71993667;p=jalview.git

diff --git a/forester/java/src/org/forester/tools/PhylogenyDecorator.java b/forester/java/src/org/forester/tools/PhylogenyDecorator.java
index 085b9d3..57ef9f0 100644
--- a/forester/java/src/org/forester/tools/PhylogenyDecorator.java
+++ b/forester/java/src/org/forester/tools/PhylogenyDecorator.java
@@ -267,7 +267,7 @@ public final class PhylogenyDecorator {
                                 if ( !node.getNodeData().isHasSequence() ) {
                                     node.getNodeData().setSequence( new Sequence() );
                                 }
-                                final Annotation annotation = new Annotation( "?" );
+                                final Annotation annotation = new Annotation();
                                 annotation.setDesc( new_value );
                                 node.getNodeData().getSequence().addAnnotation( annotation );
                                 break;
@@ -491,7 +491,7 @@ public final class PhylogenyDecorator {
         ForesterUtil.ensurePresenceOfTaxonomy( node );
         try {
             if ( tc.length() == 6 ) {
-                String t = tc.substring( 0, 5 );
+                final String t = tc.substring( 0, 5 );
                 System.out.println( "WARNING: taxonomy code " + tc + " -> " + t );
                 tc = t;
             }