X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Ftools%2FSupportCount.java;h=d68a5161a27d2c104ed8a5f7807d3d9b8a8152bc;hb=ee0d693a8a5a3e3fee98642886800ec3132773ce;hp=283668ca09cbdd254f74f6e89f0cdc0f77f0a7e3;hpb=aafd947d5ebcf9ed3218c269f432be59781ce322;p=jalview.git

diff --git a/forester/java/src/org/forester/tools/SupportCount.java b/forester/java/src/org/forester/tools/SupportCount.java
index 283668c..d68a516 100644
--- a/forester/java/src/org/forester/tools/SupportCount.java
+++ b/forester/java/src/org/forester/tools/SupportCount.java
@@ -40,8 +40,8 @@ import org.forester.phylogeny.iterators.PhylogenyNodeIterator;
 /*
  * A simple class containing a static method to evaluate the topology of a given
  * phylogeny with a list of resampled phylogenies.
- * 
- * 
+ *
+ *
  * @author Christian M Zmasek
  */
 public final class SupportCount {
@@ -74,18 +74,18 @@ public final class SupportCount {
     }
 
     /**
-     * 
+     *
      * Precondition: phylogeny and evaluator_phylogeny have to be rooted in the
      * same manner.
-     * 
+     *
      * Returns a measure of the similarity ("average bootstrap similarity")
      * between the topologies of phylogeny and evaluator_phylogeny: (sum of
      * branches which divide phylogeny in a manner consitent with
      * evaluator_phylogeny)/sum of branches in phylogeny. Therefore, this
      * measure is 1.0 for indentical topologies and 0.0 for completely
      * incompatible topologies.
-     * 
-     * 
+     *
+     *
      * @param phylogeny
      * @param evaluator_phylogeny
      * @param external_names_per_node
@@ -160,7 +160,7 @@ public final class SupportCount {
      * phylogenies. If phylogenies contains topogies with names not present in
      * phylogeny, strip_phylogenies must be set to true. phylogeny must not
      * contain names not found in all phylogenies.
-     * 
+     *
      * @param phylogeny
      *            the topology to be evaluated
      * @param evaluator_phylogenies