X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Futil%2FSequenceAccessionTools.java;h=aaa42aa182dc9bd8b5deb4137a19d04f66508386;hb=f1685730483f80ab450666b9debf318c0b45b273;hp=3efcb2b47a00dc70d8ad1260ba5f7cf353a2c4e8;hpb=6117c7791be423249668dd14e17cfee32040bb25;p=jalview.git diff --git a/forester/java/src/org/forester/util/SequenceAccessionTools.java b/forester/java/src/org/forester/util/SequenceAccessionTools.java index 3efcb2b..aaa42aa 100644 --- a/forester/java/src/org/forester/util/SequenceAccessionTools.java +++ b/forester/java/src/org/forester/util/SequenceAccessionTools.java @@ -60,9 +60,9 @@ public final class SequenceAccessionTools { + UNIPROT_KB_BASE_PATTERN_STR + ")_(([A-Z9][A-Z]{2}[A-Z0-9]{2})|RAT|PIG|PEA)(?:\\b|_)" ); public final static Pattern ENSEMBL_PATTERN = Pattern.compile( "(?:\\b|_)(ENS[A-Z]*[0-9]+)(?:\\b|_)" ); - // RefSeq accession numbers can be distinguished from GenBank accessions + // RefSeq accession numbers can be distinguished from GenBank accessions // by their distinct prefix format of 2 characters followed by an - // underscore character ('_'). For example, a RefSeq protein accession is NP_015325. + // underscore character ('_'). For example, a RefSeq protein accession is NP_015325. private final static Pattern REFSEQ_PATTERN = Pattern .compile( "(?:\\A|.*[^a-zA-Z0-9])([A-Z]{2}_\\d{6,})(?:[^a-zA-Z0-9]|\\Z)" );