X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fjava%2Fsrc%2Forg%2Fforester%2Futil%2FThreadedStreamHandler.java;h=b5253ebeae21813d41e388a86bb985414af00f27;hb=5642da5f473ab9ae57fee86c0cb3b33525a2e916;hp=ed70e75dd88f278d7041c07ed89b0ee3a45f13e5;hpb=48f7a89be9d34f1930a1f863e608235cc27184c5;p=jalview.git

diff --git a/forester/java/src/org/forester/util/ThreadedStreamHandler.java b/forester/java/src/org/forester/util/ThreadedStreamHandler.java
index ed70e75..b5253eb 100644
--- a/forester/java/src/org/forester/util/ThreadedStreamHandler.java
+++ b/forester/java/src/org/forester/util/ThreadedStreamHandler.java
@@ -2,34 +2,34 @@
 /**
  * This class is intended to be used with the SystemCommandExecutor class to let
  * users execute system commands from Java applications.
- * 
+ *
  * This class is based on work that was shared in a JavaWorld article named
  * "When System.exec() won't". That article is available at this url:
- * 
+ *
  * http://www.javaworld.com/javaworld/jw-12-2000/jw-1229-traps.html
- * 
+ *
  * Documentation for this class is available at this URL:
- * 
+ *
  * http://devdaily.com/java/java-processbuilder-process-system-exec
- * 
- * 
+ *
+ *
  * Copyright 2010 alvin j. alexander, devdaily.com.
- * 
+ *
  * This program is free software: you can redistribute it and/or modify it under
  * the terms of the GNU Lesser Public License as published by the Free Software
  * Foundation, either version 3 of the License, or (at your option) any later
  * version.
- * 
+ *
  * This program is distributed in the hope that it will be useful, but WITHOUT
  * ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
  * FOR A PARTICULAR PURPOSE. See the GNU Lesser Public License for more details.
- * 
+ *
  * You should have received a copy of the GNU Lesser Public License along with
  * this program. If not, see <http://www.gnu.org/licenses/>.
- * 
+ *
  * Please ee the following page for the LGPL license:
  * http://www.gnu.org/licenses/lgpl.txt
- * 
+ *
  */
 
 package org.forester.util;
@@ -54,7 +54,7 @@ class ThreadedStreamHandler extends Thread {
      * A simple constructor for when the sudo command is not necessary.
      * This constructor will just run the command you provide, without
      * running sudo before the command, and without expecting a password.
-     * 
+     *
      * @param inputStream
      * @param streamType
      */
@@ -65,9 +65,9 @@ class ThreadedStreamHandler extends Thread {
     /**
      * Use this constructor when you want to invoke the 'sudo' command.
      * The outputStream must not be null. If it is, you'll regret it. :)
-     * 
+     *
      * TODO this currently hangs if the admin password given for the sudo command is wrong.
-     * 
+     *
      * @param inputStream
      * @param streamType
      * @param outputStream
@@ -81,6 +81,13 @@ class ThreadedStreamHandler extends Thread {
         sudoIsRequested = true;
     }
 
+    ThreadedStreamHandler( final InputStream inputStream, final OutputStream outputStream ) {
+        this.inputStream = inputStream;
+        this.outputStream = outputStream;
+        printWriter = new PrintWriter( outputStream );
+        sudoIsRequested = false;
+    }
+
     private void doSleep( final long millis ) {
         try {
             Thread.sleep( millis );