X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fresources%2Fphyloxml_schema%2F1.10%2Fphyloxml.xsd;h=9388f0330b983386467548faee542cf1ea7ee4b8;hb=c3d667617098119dcc59c1d57a8db410fc82cd74;hp=551242670d26d018d692ab9b02e1918389a81009;hpb=54f2b7c44d8829036bc85a2a21136451096c1204;p=jalview.git

diff --git a/forester/resources/phyloxml_schema/1.10/phyloxml.xsd b/forester/resources/phyloxml_schema/1.10/phyloxml.xsd
index 5512426..9388f03 100644
--- a/forester/resources/phyloxml_schema/1.10/phyloxml.xsd
+++ b/forester/resources/phyloxml_schema/1.10/phyloxml.xsd
@@ -85,7 +85,6 @@
          <xs:element name="confidence" type="phy:Confidence" minOccurs="0" maxOccurs="unbounded"/>
          <xs:element name="width" type="xs:double" minOccurs="0"/>
          <xs:element name="color" type="phy:BranchColor" minOccurs="0"/>
-         <xs:element name="node_id" type="phy:Id" minOccurs="0"/>
          <xs:element name="taxonomy" type="phy:Taxonomy" minOccurs="0" maxOccurs="unbounded"/>
          <xs:element name="sequence" type="phy:Sequence" minOccurs="0" maxOccurs="unbounded"/>
          <xs:element name="events" type="phy:Events" minOccurs="0"/>
@@ -126,7 +125,7 @@
    </xs:complexType>
    <xs:simpleType name="TaxonomyCode">
       <xs:restriction base="xs:token">
-         <xs:pattern value="[A-Z0-9]{3,5}"/>
+         <xs:pattern value="([A-Z9][A-Z]{2}[A-Z0-9]{2})|RAT|PIG|PEA"/>
       </xs:restriction>
    </xs:simpleType>
    <xs:simpleType name="Rank">
@@ -388,7 +387,7 @@
    </xs:complexType>
    <xs:simpleType name="ref">
       <xs:restriction base="xs:token">
-         <xs:pattern value="[a-zA-Z0-9_]+:[a-zA-Z0-9_\.\-\s=]+"/>
+         <xs:pattern value="[a-zA-Z0-9_]+:\S+"/>
       </xs:restriction>
    </xs:simpleType>
    <xs:simpleType name="AppliesTo">