X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fruby%2Fevoruby%2Flib%2Fevo%2Fapps%2Fmulti_sequence_extractor.rb;h=f8838a76e144a15c8aec145166dfb2f5011cf8ff;hb=8053fdba1c18813b501304b0efa3dc0d9ecea468;hp=43aa80fbcd74e94672e29412b75cee92cbf99e96;hpb=dcdfe712174898d24c6c60f42a9296a0b8805388;p=jalview.git

diff --git a/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb b/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb
index 43aa80f..f8838a7 100644
--- a/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb
+++ b/forester/ruby/evoruby/lib/evo/apps/multi_sequence_extractor.rb
@@ -209,6 +209,7 @@ module Evoruby
 
       File.open( input_file ) do | file |
         while line = file.gets
+          line.strip!
           if ( !Util.is_string_empty?( line ) && !(line =~ /\s*#/ ) )
             values = line.split( PROTEINS_LIST_FILE_SEPARATOR )