X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fruby%2Fevoruby%2Flib%2Fevo%2Ftool%2Fphylogenies_decorator.rb;h=b2d5a87e4984031a28e1c78d4982d7d85e52fc18;hb=18f6c64d655d5f9cc321c689e1fec82067d849f3;hp=ae2d9803c3578b478940b0aaee56cd9e26131280;hpb=57e0f201ef8ec8e48eb253148d7514b11735cf74;p=jalview.git

diff --git a/forester/ruby/evoruby/lib/evo/tool/phylogenies_decorator.rb b/forester/ruby/evoruby/lib/evo/tool/phylogenies_decorator.rb
index ae2d980..b2d5a87 100644
--- a/forester/ruby/evoruby/lib/evo/tool/phylogenies_decorator.rb
+++ b/forester/ruby/evoruby/lib/evo/tool/phylogenies_decorator.rb
@@ -166,7 +166,8 @@ module Evoruby
           log << counter.to_s + ': ' + phylogeny_file + ' -> ' +  outfile + NL
 
           phylogeny_id = get_id( phylogeny_file )
-
+          puts "id:" + phylogeny_id
+          
           ids_mapfile_name = nil
           domains_mapfile_name = nil
           seqs_file_name = nil
@@ -251,8 +252,6 @@ module Evoruby
              file =~ /^#{phylogeny_id}#{suffix_pattern}$/ )
           matching_files << file
         end
-       
-       
       }
     
 
@@ -278,7 +277,6 @@ module Evoruby
              file =~ /^#{phylogeny_id}.+\d$/ )
           matching_files << file
         end
-
       }
 
       if matching_files.length < 1