X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fruby%2Fscripts%2Fclean_fasta.rb;h=1a1705b4ec7c5e3a800d575430f1e43475175791;hb=1dbc2c4a09d50805fe80b5ab3826d865153a3124;hp=6e008d486f8a7d8dd1f006c63001aa3f176d4283;hpb=47de35c937e55cccd5d474f0da468e18577ee60b;p=jalview.git

diff --git a/forester/ruby/scripts/clean_fasta.rb b/forester/ruby/scripts/clean_fasta.rb
index 6e008d4..1a1705b 100644
--- a/forester/ruby/scripts/clean_fasta.rb
+++ b/forester/ruby/scripts/clean_fasta.rb
@@ -6,10 +6,10 @@ File.open(infile, 'r') do |f|
    while line = f.gets
        if line =~ /(>.+)~.+/
           line = $1
-       elsif line =~ /(>.+)|NAME=.+/
+       elsif line =~ /(>.+)\|NAME=.+/
            line = $1
        end
-       puts s
+       puts line
    end
 end