X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=forester%2Fruby%2Fscripts%2Fmv_slinks.rb;h=e3a3f3036e5a7aadebd77391e039236a7c7b2ab8;hb=f7a4c20ecb213c0821716940c87b269e7a082809;hp=f024d94f722ac3360c8c1ead3ae29af58f7d82a8;hpb=d0fcd8b3f9df6ca78458c661d9c43015f46365e5;p=jalview.git

diff --git a/forester/ruby/scripts/mv_slinks.rb b/forester/ruby/scripts/mv_slinks.rb
index f024d94..e3a3f30 100755
--- a/forester/ruby/scripts/mv_slinks.rb
+++ b/forester/ruby/scripts/mv_slinks.rb
@@ -1,21 +1,31 @@
+#NEW_DIR = '/home/czmasek/WORK/GENOME_HMMPFAM/HMMSCAN3_no_bias_250/'
+#OLD_DIR = '/home/czmasek/WORK/GENOME_HMMPFAM/HMMSCAN30b3_no_bias_240/'
 
-NEW_DIR = '/home/czmasek/WORK/GENOME_HMMPFAM/HMMSCAN3_no_bias_250/'
-OLD_DIR = '/home/czmasek/WORK/GENOME_HMMPFAM/HMMSCAN30b3_no_bias_240/'
+NEW_DIR = '/home/czmasek/WORK/GENOME_HMMPFAM/HMMSCAN3_no_bias_260/'
+OLD_DIR = '/home/czmasek/WORK/GENOME_HMMPFAM/HMMSCAN3_no_bias_250/'
+
+# this need to be run in the dir where the links to be moved are
+# need to create a dir named 'newdir' first
 
 Dir.foreach('.') { |f| 
   if File.symlink?( f )
      link = File.readlink( f )
      puts f + ' -> ' + link 
    
-     link =~ /\/([^\/]+)\/([^\/]+)\.hmmscan30b3_240/
+     link =~ /\/([^\/]+)\/([^\/]+)\.hmmscan_250/
      group = $1
+     
      core_name = $2
      puts '  => ' + group + ' / ' + core_name
-     new_link = NEW_DIR + group + '/' + core_name + '.hmmscan_250'
+     new_link = NEW_DIR + group + '/' + core_name + '.hmmscan_260'
      puts '  => ' + new_link
      puts
-     if ( !File.exists?( new_link ) || !File.exists?( link ) )
-        puts 'ERROR!'
+     if ( !File.exists?( new_link ) )
+        puts 'ERROR ' + new_link.to_s + ' does not exist'  
+        exit
+     end
+     if ( !File.exists?( link ) )
+        puts 'ERROR ' + link.to_s + ' does not exist' 
         exit
      end
      #what is called new_link will by linked to by 'newdir/' + f.to_s:
@@ -24,4 +34,4 @@ Dir.foreach('.') { |f|
 }
 
 
-#File.symlink("testfile", "link2test") 
+