X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhelp.jhm;h=5fb79011a498d765c32506aa0d313b618f59fdfb;hb=HEAD;hp=a2094f7fd0da895a85bc6d2f36493f1f5fe67f02;hpb=847c502d6186eb62a30f37f608852e77c67c217f;p=jalview.git

diff --git a/help/help/help.jhm b/help/help/help.jhm
index a2094f7..5fb7901 100755
--- a/help/help/help.jhm
+++ b/help/help/help.jhm
@@ -161,7 +161,10 @@
    <mapID target="pdbfts" url="html/features/pdbsequencefetcher.html#pdbfts" />
    <mapID target="siftsmapping" url="html/features/siftsmapping.html" />
    <mapID target="pdbchooser" url="html/features/structurechooser.html" />
+   <mapID target="structureandpaefromfile" url="html/features/structurechooser.html#loadfromfile" />
    <mapID target="structuresvia3dbeacons" url="html/features/structurechooser.html#3dbeaconssearch" />   
+   <mapID target="workingwithpae" url="html/features/paematrices.html" />
+   <mapID target="paematrixformat" url="html/io/paematrixformat.html" />
    <mapID target="selectcolbyannot" url="html/features/columnFilterByAnnotation.html" />
    <mapID target="biojsmsa" url="html/features/biojsmsa.html" />