X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2FhelpTOC.xml;h=1b4156e076387da49d5548a71d08a3917c827784;hb=3f5088fe082c479c0de91f897ed26a5adf540f98;hp=cbef39851b30124d51fb71a6f2b330ecb2a67cb9;hpb=3c74b4df923e91c55137dc1b2b5b5ce32775cdb1;p=jalview.git

diff --git a/help/help/helpTOC.xml b/help/help/helpTOC.xml
index cbef398..1b4156e 100755
--- a/help/help/helpTOC.xml
+++ b/help/help/helpTOC.xml
@@ -24,11 +24,12 @@
 	<tocitem text="Jalview Documentation" target="home" expand="true">
 			<tocitem text="What's new" target="new" expand="true">
 				<tocitem text="Latest Release Notes" target="release"/>
-        <tocitem text="Support for ChimeraX" target="chimera"/>
+        		<tocitem text="Support for ChimeraX" target="chimera"/>
 				<tocitem text="Support for Pymol" target="pymol"/>
 				<tocitem text="Structures via 3D Beacons" target="structuresvia3dbeacons" />
 				<tocitem text="Startup Memory Settings" target="startupprefs" />
-        <tocitem text="The Java Console, Logging and Reporting Bugs" target="logging" />
+		        <tocitem text="The Java Console, Logging and Reporting Bugs" target="logging" />
+		        <tocitem text="Command line launch scripts" target="jalviewcltool"/>
 		</tocitem>
 		
 		<tocitem text="Editing Alignments" target="edit" />
@@ -89,6 +90,10 @@
 			<tocitem text="ClustalX" target="colours.clustal" />
 			<tocitem text="Zappo" target="colours.zappo" />
 			<tocitem text="Taylor" target="colours.taylor" />
+			<tocitem text="gecos:flower" target="colours.gecos-flower" />
+			<tocitem text="gecos:blossom" target="colours.gecos-blossom" />
+			<tocitem text="gecos:sunset" target="colours.gecos-sunset" />
+			<tocitem text="gecos:ocean" target="colours.gecos-ocean" />
 			<tocitem text="Hydrophobicity" target="colours.hydro" />
 			<tocitem text="Helix propensity" target="colours.helix" />
 			<tocitem text="Strand propensity" target="colours.strand" />