X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2FcolourSchemes%2Findex.html;h=6b77d913404f0b4096e84a265d245cac867e70b1;hb=33a18c18d0ec58e651de30890437cdf4e6eb542d;hp=3b16d4152f3856e8b6096756b3dfe75064645d36;hpb=a6e5f10e2efb8cfad7a0dd844b50dd0f4dcaab0e;p=jalview.git

diff --git a/help/help/html/colourSchemes/index.html b/help/help/html/colourSchemes/index.html
index 3b16d41..6b77d91 100755
--- a/help/help/html/colourSchemes/index.html
+++ b/help/help/html/colourSchemes/index.html
@@ -94,7 +94,8 @@ td {
 				<td>
 					<table border="1">
 						<tr>
-							<td nowrap></td>
+							<td nowrap>Name</td>
+							<td nowrap>CLI name</td>
 							<td>A</td>
 							<td>R</td>
 							<td>N</td>
@@ -121,6 +122,7 @@ td {
 						</tr>
 						<tr>
 							<td height="24">Clustal</td>
+							<td>clustal</td>
 							<td bgcolor="#80a0f0"></td>
 							<td bgcolor="#f01505"></td>
 							<td bgcolor="#00ff00"></td>
@@ -147,6 +149,7 @@ td {
 						</tr>
 						<tr>
 							<td height="24">Zappo</td>
+							<td>zappo</td>
 							<td bgcolor="#ffafaf"></td>
 							<td bgcolor="#6464ff"></td>
 							<td bgcolor="#00ff00"></td>
@@ -173,6 +176,7 @@ td {
 						</tr>
 						<tr>
 							<td>Taylor</td>
+							<td>taylor</td>
 							<td bgcolor="#ccff00"></td>
 							<td bgcolor="#0000ff"></td>
 							<td bgcolor="#cc00ff"></td>
@@ -199,7 +203,7 @@ td {
 						</tr>
 						<tr>
 							<td>gecos Flower</td>
-
+							<td>gecos-flower</td>
 							<td bgcolor="#b18a51"></td>
 							<td bgcolor="#83bff1"></td>
 							<td bgcolor="#0bcec6"></td>
@@ -226,6 +230,7 @@ td {
 						</tr>
 						<tr>
 							<td>gecos Blossom</td>
+							<td>gecos-blossom</td>
 							<td bgcolor="#8bc4b4"></td>
 							<td bgcolor="#fc9502"></td>
 							<td bgcolor="#b5c206"></td>
@@ -252,6 +257,7 @@ td {
 						</tr>
 						<tr>
 							<td>gecos Sunset</td>
+							<td>gecos-sunset</td>
 							<td bgcolor="#fea0fd"></td>
 							<td bgcolor="#85746a"></td>
 							<td bgcolor="#abc8f5"></td>
@@ -278,6 +284,7 @@ td {
 						</tr>
 						<tr>
 							<td>gecos Ocean</td>
+							<td>gecos-ocean</td>
 							<td bgcolor="#c6ca9b"></td>
 							<td bgcolor="#0ca0a8"></td>
 							<td bgcolor="#0adfc3"></td>
@@ -304,6 +311,7 @@ td {
 						</tr>
 						<tr>
 							<td>Hydrophobicity</td>
+							<td>hydrophobicity</td>
 							<td bgcolor="#ad0052"></td>
 							<td bgcolor="#0000ff"></td>
 							<td bgcolor="#0c00f3"></td>
@@ -330,6 +338,7 @@ td {
 						</tr>
 						<tr>
 							<td>Helix Propensity</td>
+							<td>helix-propensity</td>
 							<td bgcolor="#e718e7"></td>
 							<td bgcolor="#6f906f"></td>
 							<td bgcolor="#1be41b"></td>
@@ -356,6 +365,7 @@ td {
 						</tr>
 						<tr>
 							<td nowrap>Strand Propensity</td>
+							<td>strand-propensity</td>
 							<td bgcolor="#5858a7"></td>
 							<td bgcolor="#6b6b94"></td>
 							<td bgcolor="#64649b"></td>
@@ -382,6 +392,7 @@ td {
 						</tr>
 						<tr>
 							<td>Turn Propensity</td>
+							<td>turn-propensity</td>
 							<td bgcolor="#2cd3d3"></td>
 							<td bgcolor="#708f8f"></td>
 							<td bgcolor="#ff0000"></td>
@@ -408,6 +419,7 @@ td {
 						</tr>
 						<tr>
 							<td>Buried Index</td>
+							<td>buried-index</td>
 							<td bgcolor="#00a35c"></td>
 							<td bgcolor="#00fc03"></td>
 							<td bgcolor="#00eb14"></td>
@@ -445,7 +457,8 @@ td {
 				<td>
 					<table border="1">
 						<tr>
-							<td nowrap></td>
+							<td nowrap>Name</td>
+							<td nowrap>CLI name</td>
 							<td>A</td>
 							<!--Adenine-->
 							<td>C</td>
@@ -459,7 +472,7 @@ td {
 							<td>I</td>
 							<!--Inosine-->
 							<td>X</td>
-							<!--Xanthine (sometimes Unknown)-->
+							<!--Unknown (sometimes Xanthine)-->
 							<td>R</td>
 							<!--Unknown Purine-->
 							<td>Y</td>
@@ -485,6 +498,7 @@ td {
 						</tr>
 						<tr>
 							<td height="24">Nucleotide</td>
+							<td>nucleotide</td>
 							<td bgcolor="#64F73F"></td>
 							<td bgcolor="#FFB340"></td>
 							<td bgcolor="#EB413C"></td>
@@ -506,6 +520,7 @@ td {
 						</tr>
 						<tr>
 							<td height="24">Nucleotide Ambiguity</td>
+							<td>nucleotide-ambiguity</td>
 							<td bgcolor="#f0fff0"></td>
 							<td bgcolor="#f0fff0"></td>
 							<td bgcolor="#f0fff0"></td>
@@ -527,6 +542,7 @@ td {
 						</tr>
 						<tr>
 							<td height="24">Purine/Pyrimidine</td>
+							<td>purine-pyrimidine</td>
 							<td bgcolor="#FF83FA"></td>
 							<td bgcolor="#40E0D0"></td>
 							<td bgcolor="#FF83FA"></td>