X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Ffeatures%2Fclarguments.html;h=c0f4c42d428855c0276075006c08561ef50dfe20;hb=2319ef1a410ce35bf2ef1800fd0be4e779ee44eb;hp=5c9e31478e6de056557edb0b091291dd22d815ec;hpb=926903049560168a78c564b6be86776bfaac7252;p=jalview.git

diff --git a/help/help/html/features/clarguments.html b/help/help/html/features/clarguments.html
index 5c9e314..c0f4c42 100644
--- a/help/help/html/features/clarguments.html
+++ b/help/help/html/features/clarguments.html
@@ -47,6 +47,11 @@
           and usage stats checks)</div></td>
     </tr>
     <tr>
+      <td><div align="center">-nowebservicediscovery</div></td>
+      <td><div align="left">Do not query configured servers to
+          discover web services (<em>Since 2.11.2.0</em>)</div></td>
+    </tr>
+    <tr>
       <td><div align="center">-open FILE/URL</div></td>
       <td><div align="left">Specify the alignment file to
           open or process by providing additional arguments.</div></td>
@@ -57,6 +62,11 @@
           file instead of users default.</div></td>
     </tr>
     <tr>
+      <td><div align="center">-setprop PROPERTY=value</div></td>
+      <td><div align="left">(JalviewJS ONLY) sets the given
+          property to the given value</div></td>
+    </tr>
+    <tr>
       <td><div align="center">-features FILE/URL</div></td>
       <td><div align="left">
           <p>
@@ -86,6 +96,14 @@
           File</a> description.
       </td>
     </tr>
+        <tr>
+      <td>
+        <div align="center">-no-annotation</div>
+      </td>
+      <td>Do not display annotation below the alignment. 
+      </td>
+    </tr>
+    
     <tr>
       <td>
         <div align="center">-tree FILE/URL</div>
@@ -234,6 +252,25 @@
           </div>
       </td>
     </tr>
+    <tr>
+      <td><div align="center">-jvmmempc=PERCENT</div></td>
+      <td><div align="left"><em>Only available with standalone executable jar or jalview.bin.Launcher.</em>
+          Limit maximum heap size (memory) to PERCENT% of total physical memory detected.
+	  This defaults to 90 if total physical memory can be detected.
+	  See <a href="../memory.html">Memory usage settings for Jalview</a> for more details.
+          </div>
+      </td>
+    </tr>
+    <tr>
+      <td><div align="center">-jvmmemmax=MAXMEMORY</div></td>
+      <td><div align="left"><em>Only available with standalone executable jar or jalview.bin.Launcher.</em>
+          Limit maximum heap size (memory) to MAXMEMORY. MAXMEMORY can be specified in bytes, kilobytes(k), megabytes(m),
+	  gigabytes(g) or if you're lucky enough, terabytes(t).
+	  This defaults to 32g if total physical memory can be detected, or to 8g if total physical memory cannot be detected.
+	  See <a href="../memory.html">Memory usage settings for Jalview</a> for more details.
+          </div>
+      </td>
+    </tr>
   </table>
 </body>
 </html>