X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=help%2Fhelp%2Fhtml%2Ffeatures%2FfeaturesFormat.html;fp=help%2Fhelp%2Fhtml%2Ffeatures%2FfeaturesFormat.html;h=0e35e49a7a257a5c3c10bc011f08f889c989b653;hb=87828fe37d4da94c394322e807c132f1214046b0;hp=02261753cce122e069cafae463055bae0191b7f7;hpb=9135cbb74bbff06ea60485540194515ebcc018b0;p=jalview.git diff --git a/help/help/html/features/featuresFormat.html b/help/help/html/features/featuresFormat.html index 0226175..0e35e49 100755 --- a/help/help/html/features/featuresFormat.html +++ b/help/help/html/features/featuresFormat.html @@ -202,7 +202,11 @@ GFF data (this mixed format capability was added in Jalview 2.6).
- +Feature attributes can be included as name=value
pairs in GFF3 column 9, including (since Jalview 2.11.1.0) 'nested' sub-attributes, for example:
+ alleles=G,A,C;AF=6;CSQ=SIFT=deleterious,tolerated,PolyPhen=possibly_damaging(0.907)
+
where SIFT
and PolyPhen
are sub-attributes of CSQ
. This data is preserved if features are output in GFF format (but not, currently,
+ in Jalview format).
+
Jalview's sequence feature format